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602 datasets from 5 repositories. Filter by the analysis you need to run, not by what a repository says a dataset contains. How capability is measured.
39 of 602 datasets
- Breast Pre-Cancer AtlasMixedMachine-extracted
Why it fits: 4 measurement types on the same cohort; scarce measurements: Multiplexed tissue imaging
Bulk DNA sequencingBulk RNA sequencingSingle-cell RNA sequencingMultiplexed tissue imaging - The Lung Pre-Cancer AtlasMixedMachine-extracted
Why it fits: 4 measurement types on the same cohort; scarce measurements: Multiplexed tissue imaging
Bulk DNA sequencingBulk RNA sequencingSingle-cell RNA sequencingMultiplexed tissue imaging - Washington University Human Tumor Atlas Research CenterMixedMachine-extracted
Why it fits: 6 measurement types on the same cohort; scarce measurements: Single-cell ATAC sequencing, Multiplexed tissue imaging, Spatial transcriptomics
Bulk DNA sequencingBulk RNA sequencingSingle-cell ATAC sequencingSingle-cell RNA sequencingMultiplexed tissue imagingSpatial transcriptomics - Pre-Cancer Atlases of Cutaneous and Hematologic OriginMixedMachine-extracted
Why it fits: scarce measurements: Multiplexed tissue imaging
Bulk RNA sequencingMultiplexed tissue imaging - Human Tumor Atlas Pilot Project (HTAPP)MixedMachine-extracted
Why it fits: 6 measurement types on the same cohort; scarce measurements: Multiplexed tissue imaging, Spatial transcriptomics
Bulk DNA sequencingOtherBulk RNA sequencingSingle-cell RNA sequencingMultiplexed tissue imagingSpatial transcriptomics - Transition to Metastatic State: Lung Cancer, Pancreatic Cancer and Brain MetastasisMixedMachine-extracted
Why it fits: scarce measurements: Multiplexed tissue imaging
Single-cell RNA sequencingMultiplexed tissue imaging - Colon Molecular Atlas ProjectMixedMachine-extracted
Why it fits: 4 measurement types on the same cohort; scarce measurements: Multiplexed tissue imaging, Spatial transcriptomics
Bulk DNA sequencingSingle-cell RNA sequencingMultiplexed tissue imagingSpatial transcriptomics - CPTAC STAD StudyUnderused opportunityOpenProject-curated
Why it fits: treatment response recorded; survival endpoints, median follow-up 2.0 years; 7 measurement types on the same cohort
193 gastric cancers measured seven ways - proteome, phosphoproteome, acetylome, glycoproteome, ubiquitylome, metabolome and protein-protein interaction - the deepest single-cohort molecular characterization in the NCI portfolio, and openly downloadable.
AcetylomeGlycoproteomeMetabolomeOtherPhosphoproteomeProteome (mass spectrometry)+1 more - CPTAC PDA Discovery StudyOpenMachine-extracted
Why it fits: survival endpoints, median follow-up 15.0 months; 3 measurement types on the same cohort; scarce measurements: Glycoproteome
GlycoproteomePhosphoproteomeProteome (mass spectrometry) - CPTAC AML StudyOpenProject-curated
Why it fits: treatment response recorded; survival endpoints, median follow-up 12.1 months; 6 measurement types on the same cohort
164 acute myeloid leukaemias with proteome, phosphoproteome, acetylome and glycoproteome, plus lipidomics and metabolomics on 98 - one of only three NCI cohorts carrying lipidomic data, openly downloadable.
AcetylomeGlycoproteomeLipidomeMetabolomePhosphoproteomeProteome (mass spectrometry) - CPTAC UCEC Confirmatory StudyUnderused opportunityOpenMachine-extracted
Why it fits: survival endpoints, median follow-up 3.8 years; 4 measurement types on the same cohort; scarce measurements: Acetylome, Glycoproteome
AcetylomeGlycoproteomePhosphoproteomeProteome (mass spectrometry) - The Cellular Geography of Therapeutic Resistance in CancerMixedProject-curated
Why it fits: 3 measurement types on the same cohort; scarce measurements: Multiplexed tissue imaging
An HTAN atlas built explicitly around therapeutic resistance, with multiplexed imaging, single-cell RNA sequencing and the richest clinical annotation of any atlas here - and no publications recorded in the network's own manifest.
Bulk DNA sequencingSingle-cell RNA sequencingMultiplexed tissue imaging - CPTAC LUAD Confirmatory StudyOpenMachine-extracted
Why it fits: survival endpoints, median follow-up 18.7 months; 4 measurement types on the same cohort; scarce measurements: Acetylome, Ubiquitylome
AcetylomePhosphoproteomeProteome (mass spectrometry)Ubiquitylome - Prospective Breast BI AcetylomeOpenMachine-extracted
Why it fits: survival endpoints available; scarce measurements: Acetylome; no access request needed
Acetylome - CPTAC CCRCC Discovery StudyOpenMachine-extracted
Why it fits: 3 measurement types on the same cohort; scarce measurements: Glycoproteome; no access request needed
GlycoproteomePhosphoproteomeProteome (mass spectrometry) - TCGA Ovarian JHU GlycoproteomeOpenMachine-extracted
Why it fits: survival endpoints, median follow-up 2.5 years; scarce measurements: Glycoproteome; no access request needed
Glycoproteome - CPTAC UCEC Discovery StudyOpenMachine-extracted
Why it fits: survival endpoints, median follow-up 2.4 years; 3 measurement types on the same cohort; scarce measurements: Acetylome
AcetylomePhosphoproteomeProteome (mass spectrometry) - IPMN StudyOpenMachine-extracted
Why it fits: scarce measurements: Glycoproteome; no access request needed
GlycoproteomeProteome (mass spectrometry) - CPTAC GBM Confirmatory StudyOpenMachine-extracted
Why it fits: treatment response recorded; survival endpoints, median follow-up 14.4 months; 6 measurement types on the same cohort
AcetylomeGlycoproteomeLipidomeMetabolomePhosphoproteomeProteome (mass spectrometry) - CPTAC PDAC Proteins in SerumOpenMachine-extracted
Why it fits: survival endpoints, median follow-up 2.2 years; scarce measurements: Glycoproteome; no access request needed
GlycoproteomeProteome (mass spectrometry) - CPTAC LSCC Discovery StudyOpenMachine-extracted
Why it fits: survival endpoints, median follow-up 3.3 years; 4 measurement types on the same cohort; scarce measurements: Acetylome, Ubiquitylome
AcetylomePhosphoproteomeProteome (mass spectrometry)Ubiquitylome - CPTAC LUAD Discovery StudyOpenProject-curated
Why it fits: survival endpoints, median follow-up 15.7 months; 4 measurement types on the same cohort; scarce measurements: Acetylome, Ubiquitylome
115 lung adenocarcinomas with proteome, phosphoproteome and acetylome, plus ubiquitylome on 80 - one of five ubiquitylation datasets in the Proteomic Data Commons, openly downloadable.
AcetylomePhosphoproteomeProteome (mass spectrometry)Ubiquitylome - CPTAC GBM Discovery StudyUnderused opportunityOpenMachine-extracted
Why it fits: treatment response recorded; survival endpoints, median follow-up 12.8 months; 5 measurement types on the same cohort
AcetylomeLipidomeMetabolomePhosphoproteomeProteome (mass spectrometry) - CPTAC CCRCC Confirmatory StudyOpenMachine-extracted
Why it fits: 3 measurement types on the same cohort; scarce measurements: Glycoproteome; no access request needed
GlycoproteomePhosphoproteomeProteome (mass spectrometry) - Prospective Ovarian JHU Intact GlycoproteomeOpenMachine-extracted
Why it fits: survival endpoints available; scarce measurements: Glycoproteome; no access request needed
Glycoproteome - Prospective Ovarian JHU N-linked Glycosite-containing peptideOpenMachine-extracted
Why it fits: survival endpoints available; scarce measurements: Glycoproteome; no access request needed
Glycoproteome - HOPE-AYA GBMOpenMachine-extracted
Why it fits: survival endpoints, median follow-up 2.2 years; 3 measurement types on the same cohort; scarce measurements: Glycoproteome
GlycoproteomePhosphoproteomeProteome (mass spectrometry) - Proteogenomics of Gastric CancerUnderused opportunityOpenMachine-extracted
Why it fits: 3 measurement types on the same cohort; scarce measurements: Glycoproteome; no access request needed
GlycoproteomePhosphoproteomeProteome (mass spectrometry) - CPTAC-HCMI-Organoids Phase 1OpenMachine-extracted
Why it fits: survival endpoints, median follow-up 13.2 months; 4 measurement types on the same cohort; scarce measurements: Acetylome, Ubiquitylome
AcetylomePhosphoproteomeProteome (mass spectrometry)Ubiquitylome - Center for Pediatric Tumor Cell AtlasMixedMachine-extracted
Why it fits: 4 measurement types on the same cohort; scarce measurements: Single-cell ATAC sequencing, Multiplexed tissue imaging
Bulk DNA sequencingSingle-cell ATAC sequencingSingle-cell RNA sequencingMultiplexed tissue imaging - CPTAC CCRCC Confirmatory Study - TrainingOpenMachine-extracted
Why it fits: scarce measurements: Metabolome; no access request needed
Metabolome - CPTAC CCRCC Confirmatory Study - ValidationOpenMachine-extracted
Why it fits: scarce measurements: Metabolome; no access request needed
Metabolome - TNP - TMAMixedMachine-extracted
Why it fits: scarce measurements: Multiplexed tissue imaging, Spatial transcriptomics
Multiplexed tissue imagingSpatial transcriptomics - Broad Institute - MedulloblastomaUnderused opportunityOpenMachine-extracted
Why it fits: 3 measurement types on the same cohort; scarce measurements: Acetylome; no access request needed
AcetylomePhosphoproteomeProteome (mass spectrometry) - CPTAC non-ccRCC StudyUnderused opportunityOpenMachine-extracted
Why it fits: 4 measurement types on the same cohort; scarce measurements: Glycoproteome, Metabolome; no access request needed
GlycoproteomeMetabolomePhosphoproteomeProteome (mass spectrometry) - Multi-omic Characterization of Transformation of Familial Adenomatous PolyposisMixedMachine-extracted
Why it fits: 7 measurement types on the same cohort; scarce measurements: Hi-C chromatin conformation, Single-cell ATAC sequencing, Multiplexed tissue imaging
Bulk DNA sequencingHi-C chromatin conformationProteome (mass spectrometry)Bulk RNA sequencingSingle-cell ATAC sequencingSingle-cell RNA sequencing+1 more - Omic and Multidimensional Spatial Atlas of Metastatic Breast CancersMixedProject-curated
Why it fits: 9 measurement types on the same cohort; scarce measurements: Electron microscopy, Single-cell ATAC sequencing, Multiplexed tissue imaging, Spatial transcriptomics
Serial biopsies from metastatic breast cancer patients measured nine ways including electron microscopy, Visium spatial transcriptomics, multiplexed imaging and single-cell ATAC - 120,000 files, and the only electron microscopy in the corpus.
Bulk DNA sequencingElectron microscopyOtherReverse phase protein arrayBulk RNA sequencingSingle-cell ATAC sequencing+3 more - TNP SARDANAMixedMachine-extracted
Why it fits: scarce measurements: Multiplexed tissue imaging
Multiplexed tissue imaging - SRRSMixedMachine-extracted
Why it fits: 3 measurement types on the same cohort; scarce measurements: Single-cell ATAC sequencing, Multiplexed tissue imaging
Single-cell ATAC sequencingSingle-cell RNA sequencingMultiplexed tissue imaging