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Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]}],"access_steps":[{"order":1,"action":"Register at Synapse and accept the HTAN terms","detail":"One free account covers the atlas; the terms are click-through, not a data access request.","url":"https://humantumoratlas.org/data-access","requires":["Synapse account"],"est_time":"15 minutes","cli_snippet":null,"audience":"human","evidence":[{"method":"derived","source_url":"https://humantumoratlas.org/data-access","source_label":"HTAN access documentation","retrieved_at":"2026-09-21T12:30:59.429849Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]},{"order":2,"action":"Download the available files from Synapse","detail":"Derived data and other released files become available after the terms are accepted.","url":"https://help.synapse.org/docs/Getting-Started.2055471150.html","requires":[],"est_time":"minutes to hours","cli_snippet":"synapse get syn39147270","audience":"human","evidence":[{"method":"derived","source_url":"https://help.synapse.org/docs/Getting-Started.2055471150.html","source_label":"HTAN access documentation","retrieved_at":"2026-09-21T12:30:59.429851Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]},{"order":3,"action":"Request controlled sequencing through dbGaP when needed","detail":"Raw and aligned sequencing may require an approved request; derived analyses often do not.","url":"https://humantumoratlas.org/data-access","requires":["eRA Commons account","approved dbGaP request"],"est_time":"days to a few weeks","cli_snippet":null,"audience":"human","evidence":[{"method":"derived","source_url":"https://humantumoratlas.org/data-access","source_label":"HTAN access documentation","retrieved_at":"2026-09-21T12:30:59.429853Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]},{"order":4,"action":"Give an agent a Synapse token, not a password","detail":"Unauthenticated calls return metadata and no files, so an agent should report the credential requirement explicitly.","url":"https://help.synapse.org/docs/Getting-Started.2055471150.html","requires":["SYNAPSE_AUTH_TOKEN"],"est_time":null,"cli_snippet":"export SYNAPSE_AUTH_TOKEN=...\nsynapse get syn39147270","audience":"agent","evidence":[{"method":"derived","source_url":"https://help.synapse.org/docs/Getting-Started.2055471150.html","source_label":"HTAN access documentation","retrieved_at":"2026-09-21T12:30:59.429855Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]}],"analysis_examples":[],"agent_package":{"json_url":"/data/datasets/htan-the-lung-pre-cancer-atlas.json","jsonld_url":"/data/jsonld/htan-the-lung-pre-cancer-atlas.jsonld","croissant_url":"/data/croissant/htan-the-lung-pre-cancer-atlas.json","instructions_url":"/data/agent/htan-the-lung-pre-cancer-atlas.md","bundle_url":null,"mcp_resource_uri":null},"related_dataset_ids":[],"related_underexplored_ids":[],"review":{"status":"machine_only","reviewer":null,"reviewer_affiliation":null,"reviewed_at":null,"sections_reviewed":[],"open_questions":[],"notes":null},"verification":{"last_verified_at":null,"link_checks":[],"n_links_ok":0,"n_links_broken":0,"upstream_version_seen":null,"upstream_version_changed":false,"upstream_counts_seen":{},"upstream_drift":{},"notes":[]},"is_showcase":false,"completeness_score":32.1,"tags":["htan","spatial","single-cell","rare-modality","treatment-linked"],"search_text":null}