{"id":"gdc-tcga-ucs","title":"Uterine Carcinosarcoma","short_title":"TCGA-UCS","aliases":["tcga_ucs"],"summary":"Uterine carcinosarcoma (UCS) is a cancer that develops in the uterus. Carcinosarcoma signifies that, when looked at under a microscope, the tumor displays histological features of both endometrial carcinoma and sarcoma. Endometrial carcinoma starts in the endometrium, the inner layer of tissue lining the uterus, while sarcoma begins in the outer layer of muscle of the uterus. A rare cancer, UCS makes up less than 5% of all uterine cancers. In the U.S., about two per 100,000 women develop UCS annually. Roughly only 35% of patients survive five years after diagnosis. Please see the DICOM converted Slide Microscopy images for the TCGA-UCS collection page to learn more about the histopathology images and to obtain any supporting metadata for this collection.","one_liner":null,"identifiers":[{"scheme":"gdc_project_id","value":"TCGA-UCS","url":"https://portal.gdc.cancer.gov/projects/TCGA-UCS","is_primary":true,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"scheme":"gdc_program","value":"TCGA","url":null,"is_primary":false,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"scheme":"dbgap_phs","value":"phs000178","url":"https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000178","is_primary":false,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"scheme":"idc_collection_id","value":"tcga_ucs","url":"https://portal.imaging.datacommons.cancer.gov/explore/?collection_id=tcga_ucs","is_primary":true,"evidence":[{"method":"api","source_url":"https://api.imaging.datacommons.cancer.gov/v3/collections/tcga_ucs","source_label":"IDC v3 API /collections","retrieved_at":"2026-09-18T02:44:36.389375Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"scheme":"tcia_collection","value":"TCGA-UCS","url":"https://www.cancerimagingarchive.net/collections/","is_primary":false,"evidence":[{"method":"api","source_url":"https://api.imaging.datacommons.cancer.gov/v3/collections/tcga_ucs","source_label":"IDC v3 API /collections","retrieved_at":"2026-09-18T02:44:36.389375Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"scheme":"zenodo","value":"10.5281/zenodo.12690041","url":null,"is_primary":false,"evidence":[{"method":"fulltext","source_url":"https://api.imaging.datacommons.cancer.gov/v3/collections/tcga_ucs","source_label":"IDC collection description","retrieved_at":"2026-09-18T02:44:36.389375Z","snippet":"rs after diagnosis. Please see the DICOM converted Slide Microscopy images for the TCGA-UCS collection page to learn more about the histopathology images and to obtain any supporting metadata for th","locator":"accession extracted from description prose","confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Cross-repository link recovered from prose; verify before relying on it."}]}],"repository":{"name":"NCI Genomic Data Commons","short_name":"GDC","url":"https://portal.gdc.cancer.gov","is_nci_crdc_node":true,"is_nih_repository":true},"additional_repositories":[{"name":"NCI Imaging Data Commons","short_name":"IDC","url":"https://portal.imaging.datacommons.cancer.gov","is_nci_crdc_node":true,"is_nih_repository":true}],"program_name":"TCGA","program_url":"https://portal.gdc.cancer.gov/analysis_page?app=Projects","nci_program":"TCGA","generating_institutions":[],"data_generation_funding_role":"generation","version":null,"release_date":"2017-01-01","last_upstream_update":null,"retrieved_at":"2026-09-18T02:37:12.977265Z","landing_page_url":"https://portal.gdc.cancer.gov/projects/TCGA-UCS","cancer_types":[{"label":"Basal Cell Neoplasms","ontology":null,"code":null,"url":null},{"label":"Complex Mixed and Stromal Neoplasms","ontology":null,"code":null,"url":null}],"primary_sites":["Corpus uteri","Uterus","Uterus, NOS"],"subject":{"scope":"single","tissues":["UTERUS"],"evidence":[{"method":"derived","source_url":null,"source_label":"cds.subjects","retrieved_at":null,"snippet":null,"locator":"cancer_types: Basal Cell Neoplasms, Complex Mixed and Stromal Neoplasms; primary_sites: Corpus uteri, Uterus, Uterus, NOS","confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Repository disease labels or primary sites mapped to pinned tissues."}]},"is_pediatric":null,"model_systems":[],"cohort":{"n_cases":57,"n_samples":null,"n_aliquots":null,"n_files":3769,"total_bytes":27209568392145,"n_tumor_cases":null,"n_normal_cases":null,"has_matched_normal":null,"demographics":{"sex":{"female":57},"race":{"white":44,"black or african american":9,"asian":3,"unknown":1},"ethnicity":{"not hispanic or latino":43,"not reported":9,"unknown":4,"hispanic or latino":1},"age_at_diagnosis_years":{"n":57.0,"min":51.5,"q1":62.9,"median":68.6,"q3":76.0,"max":90.0},"vital_status":{"dead":35,"alive":22},"country_or_region":{"united states":56,"vietnam":1},"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"demographic.*","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null},{"method":"api","source_url":"https://api.imaging.datacommons.cancer.gov/v3/collections/tcga_ucs","source_label":"IDC v3 API /collections","retrieved_at":"2026-09-18T02:44:36.389375Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},"assays":[{"modality":"rna_seq","label":"Bulk RNA sequencing","platform":"illumina","n_cases":57,"n_samples":null,"n_files":513,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"mirna","label":"microRNA sequencing","platform":"illumina","n_cases":57,"n_samples":null,"n_files":171,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"wxs","label":"Whole exome sequencing","platform":"illumina","n_cases":57,"n_samples":null,"n_files":912,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"copy_number","label":"SNP genotyping array (copy number, germline)","platform":"illumina","n_cases":57,"n_samples":null,"n_files":715,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"methylation","label":"DNA methylation array","platform":"illumina","n_cases":57,"n_samples":null,"n_files":171,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"histopathology","label":"Whole-slide diagnostic images","platform":"illumina","n_cases":57,"n_samples":null,"n_files":91,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"clinical","label":"Clinical","platform":null,"n_cases":57,"n_samples":null,"n_files":129,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"radiology","label":"DICOM medical imaging","platform":null,"n_cases":57,"n_samples":null,"n_files":null,"data_levels":["DICOM series"],"access_tier":"open","evidence":[{"method":"api","source_url":"https://api.imaging.datacommons.cancer.gov/v3/collections/tcga_ucs","source_label":"IDC v3 API /collections","retrieved_at":"2026-09-18T02:44:36.389375Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"wgs","label":"Whole genome sequencing","platform":"illumina","n_cases":50,"n_samples":null,"n_files":774,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"structural_variant","label":"Somatic Structural Variation","platform":null,"n_cases":50,"n_samples":null,"n_files":201,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"modality":"protein_array","label":"Reverse phase protein array","platform":"illumina","n_cases":48,"n_samples":null,"n_files":48,"data_levels":[],"access_tier":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/projects/TCGA-UCS?expand=summary,summary.data_categories,summary.experimental_strategies,program","source_label":"GDC API /projects","retrieved_at":"2026-09-18T02:32:25.909822Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]}],"clinical_variables":[{"name":"demographic.sex_at_birth","harmonized_name":"demographic.sex_at_birth","label":"Sex at birth","category":"demographic","n_nonmissing":57,"n_not_reported":0,"n_informative":57,"n_total":57,"coverage_pct":100.0,"populated_pct":100.0,"is_repeated":false,"example_values":["female"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: demographic.sex_at_birth","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"demographic.race","harmonized_name":"demographic.race","label":"Race","category":"demographic","n_nonmissing":57,"n_not_reported":1,"n_informative":56,"n_total":57,"coverage_pct":98.2,"populated_pct":100.0,"is_repeated":false,"example_values":["white","black or african american","asian","unknown"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: demographic.race","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"demographic.ethnicity","harmonized_name":"demographic.ethnicity","label":"Ethnicity","category":"demographic","n_nonmissing":57,"n_not_reported":13,"n_informative":44,"n_total":57,"coverage_pct":77.2,"populated_pct":100.0,"is_repeated":false,"example_values":["not hispanic or latino","not reported","unknown","hispanic or latino"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: demographic.ethnicity","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"demographic.vital_status","harmonized_name":"demographic.vital_status","label":"Vital status","category":"outcome","n_nonmissing":57,"n_not_reported":0,"n_informative":57,"n_total":57,"coverage_pct":100.0,"populated_pct":100.0,"is_repeated":false,"example_values":["dead","alive"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: demographic.vital_status","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"demographic.cause_of_death","harmonized_name":"demographic.cause_of_death","label":"Cause of death","category":"outcome","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: demographic.cause_of_death","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"demographic.population_group","harmonized_name":"demographic.population_group","label":"Population group","category":"demographic","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: demographic.population_group","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"demographic.country_of_residence_at_enrollment","harmonized_name":"demographic.country_of_residence_at_enrollment","label":"Country of residence","category":"demographic","n_nonmissing":57,"n_not_reported":0,"n_informative":57,"n_total":57,"coverage_pct":100.0,"populated_pct":100.0,"is_repeated":false,"example_values":["united states","vietnam"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: demographic.country_of_residence_at_enrollment","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.primary_diagnosis","harmonized_name":"diagnoses.primary_diagnosis","label":"Primary diagnosis","category":"diagnosis","n_nonmissing":57,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":100.0,"is_repeated":true,"example_values":["mullerian mixed tumor","carcinosarcoma, nos","infiltrating duct carcinoma, nos","adenocarcinoma, nos","basal cell carcinoma, nos","intraductal carcinoma, noninfiltrating, nos"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.primary_diagnosis (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.morphology","harmonized_name":"diagnoses.morphology","label":"Morphology (ICD-O)","category":"pathology","n_nonmissing":57,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":100.0,"is_repeated":true,"example_values":["8950/3","8980/3","8500/3","8090/3","8140/3","8500/2"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.morphology (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.tissue_or_organ_of_origin","harmonized_name":"diagnoses.tissue_or_organ_of_origin","label":"Tissue or organ of origin","category":"diagnosis","n_nonmissing":57,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":100.0,"is_repeated":true,"example_values":["endometrium","uterus, nos","lymph node, nos","pelvis, nos","lung, nos","vagina, nos"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.tissue_or_organ_of_origin (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.ajcc_pathologic_stage","harmonized_name":"diagnoses.ajcc_pathologic_stage","label":"AJCC pathologic stage","category":"staging","n_nonmissing":1,"n_not_reported":0,"n_informative":1,"n_total":57,"coverage_pct":1.8,"populated_pct":1.8,"is_repeated":false,"example_values":["stage iia"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.ajcc_pathologic_stage","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.ajcc_clinical_stage","harmonized_name":"diagnoses.ajcc_clinical_stage","label":"AJCC clinical stage","category":"staging","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.ajcc_clinical_stage","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.tumor_grade","harmonized_name":"diagnoses.tumor_grade","label":"Tumor grade","category":"pathology","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.tumor_grade","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.prior_treatment","harmonized_name":"diagnoses.prior_treatment","label":"Prior treatment","category":"treatment","n_nonmissing":57,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":100.0,"is_repeated":true,"example_values":["no","yes"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.prior_treatment (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.prior_malignancy","harmonized_name":"diagnoses.prior_malignancy","label":"Prior malignancy","category":"diagnosis","n_nonmissing":57,"n_not_reported":0,"n_informative":57,"n_total":57,"coverage_pct":100.0,"populated_pct":100.0,"is_repeated":false,"example_values":["no","yes"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.prior_malignancy","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.synchronous_malignancy","harmonized_name":"diagnoses.synchronous_malignancy","label":"Synchronous malignancy","category":"diagnosis","n_nonmissing":57,"n_not_reported":0,"n_informative":57,"n_total":57,"coverage_pct":100.0,"populated_pct":100.0,"is_repeated":false,"example_values":["no"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.synchronous_malignancy","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.progression_or_recurrence","harmonized_name":"diagnoses.progression_or_recurrence","label":"Progression or recurrence","category":"outcome","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.progression_or_recurrence","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.last_known_disease_status","harmonized_name":"diagnoses.last_known_disease_status","label":"Last known disease status","category":"outcome","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.last_known_disease_status","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.classification_of_tumor","harmonized_name":"diagnoses.classification_of_tumor","label":"Classification of tumor","category":"pathology","n_nonmissing":57,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":100.0,"is_repeated":true,"example_values":["primary","recurrence","metastasis","prior primary","progression"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.classification_of_tumor (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.treatments.treatment_type","harmonized_name":"diagnoses.treatments.treatment_type","label":"Treatment type","category":"treatment","n_nonmissing":57,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":100.0,"is_repeated":true,"example_values":["pharmaceutical therapy, nos","radiation therapy, nos","chemotherapy","surgery, nos","surgery, minimally invasive","surgery, open"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.treatments.treatment_type (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.treatments.treatment_or_therapy","harmonized_name":"diagnoses.treatments.treatment_or_therapy","label":"Treatment given","category":"treatment","n_nonmissing":57,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":100.0,"is_repeated":true,"example_values":["yes","no","unknown","not reported"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.treatments.treatment_or_therapy (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.treatments.therapeutic_agents","harmonized_name":"diagnoses.treatments.therapeutic_agents","label":"Therapeutic agents","category":"treatment","n_nonmissing":57,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":100.0,"is_repeated":true,"example_values":["tamoxifen","carboplatin","paclitaxel","ifosfamide","cisplatin","docetaxel"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.treatments.therapeutic_agents (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.treatments.treatment_outcome","harmonized_name":"diagnoses.treatments.treatment_outcome","label":"Treatment outcome","category":"treatment","n_nonmissing":42,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":73.7,"is_repeated":true,"example_values":["complete response","progressive disease","unknown","stable disease","partial response","treatment ongoing"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.treatments.treatment_outcome (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"diagnoses.treatments.regimen_or_line_of_therapy","harmonized_name":"diagnoses.treatments.regimen_or_line_of_therapy","label":"Regimen or line of therapy","category":"treatment","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: diagnoses.treatments.regimen_or_line_of_therapy","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"follow_ups.disease_response","harmonized_name":"follow_ups.disease_response","label":"Disease response at follow-up","category":"followup","n_nonmissing":57,"n_not_reported":null,"n_informative":null,"n_total":57,"coverage_pct":null,"populated_pct":100.0,"is_repeated":true,"example_values":["wt-with tumor","tf-tumor free","unknown"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: follow_ups.disease_response (one-to-many; counts are per record)","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"follow_ups.progression_or_recurrence","harmonized_name":"follow_ups.progression_or_recurrence","label":"Progression at follow-up","category":"followup","n_nonmissing":31,"n_not_reported":0,"n_informative":31,"n_total":57,"coverage_pct":54.4,"populated_pct":54.4,"is_repeated":false,"example_values":["yes"],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: follow_ups.progression_or_recurrence","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"follow_ups.ecog_performance_status","harmonized_name":"follow_ups.ecog_performance_status","label":"ECOG performance status","category":"followup","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: follow_ups.ecog_performance_status","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"exposures.tobacco_smoking_status","harmonized_name":"exposures.tobacco_smoking_status","label":"Tobacco smoking status","category":"exposure","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: exposures.tobacco_smoking_status","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},{"name":"exposures.alcohol_history","harmonized_name":"exposures.alcohol_history","label":"Alcohol history","category":"exposure","n_nonmissing":0,"n_not_reported":0,"n_informative":0,"n_total":57,"coverage_pct":0.0,"populated_pct":0.0,"is_repeated":false,"example_values":[],"unit":null,"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&facets=demographic.sex_at_birth%2Cdemographic.race%2Cdemographic.ethnicity%2Cdemographic.vital_status%2Cdemographic.cause_of_death%2Cdemographic.population_group%2Cdemographic.country_of_residence_at_enrollment%2Cdiagnoses.primary_diagnosis%2Cdiagnoses.morphology%2Cdiagnoses.tissue_or_organ_of_origin%2Cdiagnoses.ajcc_pathologic_stage%2Cdiagnoses.ajcc_clinical_stage%2Cdiagnoses.tumor_grade%2Cdiagnoses.prior_treatment%2Cdiagnoses.prior_malignancy%2Cdiagnoses.synchronous_malignancy%2Cdiagnoses.progression_or_recurrence%2Cdiagnoses.last_known_disease_status%2Cdiagnoses.classification_of_tumor%2Cdiagnoses.treatments.treatment_type%2Cdiagnoses.treatments.treatment_or_therapy%2Cdiagnoses.treatments.therapeutic_agents%2Cdiagnoses.treatments.treatment_outcome%2Cdiagnoses.treatments.regimen_or_line_of_therapy%2Cfollow_ups.disease_response%2Cfollow_ups.progression_or_recurrence%2Cfollow_ups.ecog_performance_status%2Cexposures.tobacco_smoking_status%2Cexposures.alcohol_history&size=0","source_label":"GDC API /cases facets","retrieved_at":"2026-09-18T02:37:12.042959Z","snippet":null,"locator":"facet: exposures.alcohol_history","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]}],"longitudinal":{"has_followup":true,"has_survival_endpoint":true,"survival_endpoints":["overall survival","progression-free interval"],"median_followup_months":19.6,"max_followup_months":140.2,"n_cases_with_followup":57,"has_serial_samples":true,"timepoints":[],"n_cases_with_serial":57,"has_treatment_response":true,"response_criteria":["complete response","partial response","progressive disease","stable disease","treatment ongoing"],"evidence":[{"method":"api","source_url":"https://api.gdc.cancer.gov/cases?filters=%7B%22content%22%3A+%7B%22field%22%3A+%22project.project_id%22%2C+%22value%22%3A+%5B%22TCGA-UCS%22%5D%7D%2C+%22op%22%3A+%22in%22%7D&fields=diagnoses.age_at_diagnosis%2Cdiagnoses.days_to_last_follow_up%2Cdiagnoses.days_to_recurrence%2Cdemographic.days_to_death%2Cdemographic.vital_status%2Cfollow_ups.days_to_follow_up%2Cfollow_ups.days_to_progression%2Cdiagnoses.treatments.days_to_treatment_start&size=57&format=json","source_label":"GDC API /cases (case-level fields)","retrieved_at":"2026-09-18T02:37:12.413000Z","snippet":null,"locator":"computed from 57 cases; follow-up time derivable for 57 of them","confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},"access":{"tier":"mixed","open_components":["1,525 open-access files"],"controlled_components":["2,244 controlled-access files"],"mechanism":"Data Access Request through dbGaP using an eRA Commons account; institutional signing official approval required","dua_url":"https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000178","data_access_committee":"NCI Data Access Committee","typical_turnaround":"days to a few weeks after signing official approval","embargo_until":null,"login_required":true,"citation_requirement":"Cite the dataset accession and the program's publication guidelines; see the GDC publication policy.","license":"NIH Genomic Data Sharing Policy terms","publication_policy_url":"https://gdc.cancer.gov/about-data/publications","evidence":[{"method":"api","source_url":"https://api.imaging.datacommons.cancer.gov/v3/collections/tcga_ucs","source_label":"IDC v3 API /collections","retrieved_at":"2026-09-18T02:44:36.389375Z","snippet":null,"locator":null,"confidence":"high","reviewer":null,"reviewed_at":null,"note":null}]},"useful_for":[],"limitations":[],"inappropriate_uses":[],"primary_publications":[{"pmid":"28292439","pmcid":null,"doi":null,"title":"Integrated Molecular Characterization of Uterine Carcinosarcoma","journal":"Cancer Cell","year":2017,"authors_short":null,"n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/28292439/","is_open_access":null,"citation_count":null,"evidence":[{"method":"curated","source_url":"https://pubmed.ncbi.nlm.nih.gov/28292439/","source_label":"Marker paper (curated registry)","retrieved_at":"2026-09-21T12:30:56.916660Z","snippet":null,"locator":"marker paper for gdc-tcga-ucs","confidence":"high","reviewer":"CD2S project curation","reviewed_at":"2026-09-20","note":"Named by a reviewer as the publication that describes this cohort and reports its data generation, and verified against Europe PMC by title, journal and year. This is what the dataset's citation count counts citations to, and the only thing a generation award is attributed from."}]}],"reuse":[{"publication":{"pmid":"31672974","pmcid":"PMC6823358","doi":"10.1038/s41467-019-12985-x","title":"Clinically relevant molecular subtypes and genomic alteration-independent differentiation in gynecologic carcinosarcoma.","journal":"Nature communications","year":2019,"authors_short":"Gotoh et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/31672974/","is_open_access":true,"citation_count":125,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"DATA_AVAILABILITY, METHODS","author_keys":["fujiwara k","gotoh o","hasegawa k","kato k","matsumura n","mori s","noda t","nomura h","omatsu k","sugiyama y","takazawa y","takeshima n","taki m","tanaka n"],"nci_funded_reuse":false,"linked_grants":[],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DATA_AVAILABILITY:\"TCGA-UCS\"","source_label":"Europe PMC section search (DATA_AVAILABILITY)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in DATA_AVAILABILITY","confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]},{"publication":{"pmid":"39814891","pmcid":"PMC11864983","doi":"10.1038/s41586-024-08426-5","title":"IL-33-activated ILC2s induce tertiary lymphoid structures in pancreatic cancer.","journal":"Nature","year":2025,"authors_short":"Amisaki et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/39814891/","is_open_access":true,"citation_count":108,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"METHODS","author_keys":["amisaki m","artis d","baca m","balachandran v","bruno e","chandra a","cheng c","doane a","gardner r","greenbaum b","guasp p","gönen m","khan a","lorenz i","martis s","merghoub t","milighetti m","moral j","nyakatura e","odgerel z","ohmoto a","patterson e","payne g","reiche c","rojas l","sethna z","soares k","solovyov a","tumanov a","vergnolle o","waters t","yano h","zebboudj a","zhang s","zhao j"],"nci_funded_reuse":true,"linked_grants":["R01CA262516","P50CA257881","P30CA008748"],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=METHODS:\"TCGA-UCS\"","source_label":"Europe PMC section search (METHODS)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in METHODS","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]},{"publication":{"pmid":"38632274","pmcid":"PMC11024142","doi":"10.1038/s41467-024-47195-7","title":"A cfDNA methylation-based tissue-of-origin classifier for cancers of unknown primary.","journal":"Nature communications","year":2024,"authors_short":"Conway et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/38632274/","is_open_access":true,"citation_count":59,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"METHODS","author_keys":["brady g","chemi f","clipson a","conway a","cook n","dive c","ferdous s","hill s","hossain a","kamieniecka k","kerr a","krebs m","mitchell c","pearce s","rothwell d","slane-tan d","white d"],"nci_funded_reuse":false,"linked_grants":[],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=METHODS:\"TCGA-UCS\"","source_label":"Europe PMC section search (METHODS)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in METHODS","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]},{"publication":{"pmid":"35012638","pmcid":"PMC8751371","doi":"10.1186/s13073-021-00990-z","title":"Patient-derived xenograft models capture genomic heterogeneity in endometrial cancer.","journal":"Genome medicine","year":2022,"authors_short":"Bonazzi et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/35012638/","is_open_access":true,"citation_count":30,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"DATA_AVAILABILITY, METHODS","author_keys":["bonazzi v","chetty n","davidson a","davies c","garrett a","kazakoff s","kondrashova o","koufariotis l","lakis v","newell f","nicklin j","nones k","packer l","patch a","pearson j","perrin l","pollock p","ramarao-milne p","rogers r","sengal a","smith d","waddell n"],"nci_funded_reuse":false,"linked_grants":[],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DATA_AVAILABILITY:\"TCGA-UCS\"","source_label":"Europe PMC section search (DATA_AVAILABILITY)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in DATA_AVAILABILITY","confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]},{"publication":{"pmid":"38584169","pmcid":"PMC10999427","doi":"10.1038/s41598-024-58550-5","title":"Pan-cancer analysis reveals IL32 is a potential prognostic and immunotherapeutic biomarker in cancer.","journal":"Scientific reports","year":2024,"authors_short":"Han et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/38584169/","is_open_access":true,"citation_count":16,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"METHODS","author_keys":["han f"],"nci_funded_reuse":false,"linked_grants":[],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=METHODS:\"TCGA-UCS\"","source_label":"Europe PMC section search (METHODS)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in METHODS","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]},{"publication":{"pmid":"38035042","pmcid":"PMC10686811","doi":"10.1016/j.ncrna.2023.10.006","title":"ExplORRNet: An interactive web tool to explore stage-wise miRNA expression profiles and their interactions with mRNA and lncRNA in human breast and gynecological cancers.","journal":"Non-coding RNA research","year":2024,"authors_short":"Lawarde et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/38035042/","is_open_access":true,"citation_count":13,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"METHODS","author_keys":["jaal j","lavogina d","lawarde a","modhukur v","nath a","salumets a","sharif r"],"nci_funded_reuse":false,"linked_grants":[],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=METHODS:\"TCGA-UCS\"","source_label":"Europe PMC section search (METHODS)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in METHODS","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]},{"publication":{"pmid":"36884358","pmcid":"PMC11977603","doi":"10.1096/fj.202201022rrr","title":"A multidimensional pan-cancer analysis of DCAF13 and its protumorigenic effect in lung adenocarcinoma.","journal":"FASEB journal : official publication of the Federation of American Societies for Experimental Biology","year":2023,"authors_short":"Wei et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/36884358/","is_open_access":true,"citation_count":13,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"METHODS","author_keys":["wei s","xing j"],"nci_funded_reuse":false,"linked_grants":[],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=METHODS:\"TCGA-UCS\"","source_label":"Europe PMC section search (METHODS)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in METHODS","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]},{"publication":{"pmid":"40940333","pmcid":"PMC12432156","doi":"10.1038/s41467-025-63688-5","title":"Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond.","journal":"Nature communications","year":2025,"authors_short":"Uyar et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/40940333/","is_open_access":true,"citation_count":10,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"RESULTS","author_keys":["akalin a","franke v","grüning b","naghsh n","sarigun a","savchyn t","shaik m","uyar b","wurmus r"],"nci_funded_reuse":false,"linked_grants":[],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=RESULTS:\"TCGA-UCS\"","source_label":"Europe PMC section search (RESULTS)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in RESULTS","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]},{"publication":{"pmid":"35188574","pmcid":"PMC9177987","doi":"10.1093/nar/gkac064","title":"Depth normalization of small RNA sequencing: using data and biology to select a suitable method.","journal":"Nucleic acids research","year":2022,"authors_short":"Düren et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/35188574/","is_open_access":true,"citation_count":10,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"METHODS","author_keys":["düren y","lederer j","qin l"],"nci_funded_reuse":true,"linked_grants":["R21CA214845","P30CA008748"],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=METHODS:\"TCGA-UCS\"","source_label":"Europe PMC section search (METHODS)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in METHODS","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]},{"publication":{"pmid":"35106465","pmcid":"PMC8786644","doi":"10.1016/j.isci.2021.103617","title":"A gradient tree boosting and network propagation derived pan-cancer survival network of the tumor microenvironment.","journal":"iScience","year":2022,"authors_short":"Thedinga et al.","n_authors":null,"url":"https://pubmed.ncbi.nlm.nih.gov/35106465/","is_open_access":true,"citation_count":10,"evidence":[]},"tier":"t3_analyzed","kind":"secondary_analysis","independent_of_generators":true,"what_they_analyzed":null,"what_they_found":null,"methods_summary":null,"modalities_used":[],"accession_snippet":null,"accession_locator":"RESULTS","author_keys":["herwig r","thedinga k"],"nci_funded_reuse":false,"linked_grants":[],"adjudicated_by":null,"adjudicated_at":null,"evidence":[{"method":"fulltext","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=RESULTS:\"TCGA-UCS\"","source_label":"Europe PMC section search (RESULTS)","retrieved_at":"2026-09-18T03:34:45.291578Z","snippet":null,"locator":"accession \"TCGA-UCS\" indexed in RESULTS","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Search strategy epmc-sectioned-v1. Section placement is used to grade the strength of reuse evidence, not merely to confirm a citation."}]}],"reuse_metrics":{"n_candidates_screened":33,"n_by_tier":{"t3_analyzed":33,"t2_declared":13,"t1_accession":0,"t0_mention":1},"n_by_tier_raw":{"t3_analyzed":35,"t2_declared":14,"t1_accession":0,"t0_mention":1},"accession_precision":{"token":"TCGA-UCS","query":"METHODS:\"TCGA-UCS\"","strategy_id":"epmc-literal-precision-v1","needs_correction":true,"precision":0.931,"precision_low":0.7804,"precision_high":0.9809,"n_sampled":30,"n_checked":29,"n_literal":27,"note":"27 of 29 sampled open-access articles contain the literal accession TCGA-UCS; the rest match only because Europe PMC indexes the hyphen as a word break. Counts for this dataset are scaled by 93% accordingly."},"n_citations_to_primary_publication":337,"citation_to_reuse_ratio":10.2,"has_citable_accession":true,"n_verified_reuse":33,"n_reuse_examined":67,"n_independent_reuse":10,"n_nci_funded_reuse":2,"first_reuse_year":2019,"latest_reuse_year":2025,"years_since_release":9.72,"expected_reuse":61.35,"reuse_gap_index":-0.875,"reuse_gap_percentile":28.8,"search_strategy_id":"epmc-index-v3","searched_at":"2026-09-20T18:07:49.361771Z","no_reuse_identified":false,"evidence":[{"method":"derived","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search","source_label":"Europe PMC section-scoped hit counts","retrieved_at":"2026-09-20T18:07:49.361771Z","snippet":null,"locator":"tokens: TCGA-UCS; queries: METHODS:\"TCGA-UCS\"; DATA_AVAILABILITY:\"TCGA-UCS\"; ACCESSION_ID:\"TCGA-UCS\"; INTRO:\"TCGA-UCS\"","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Index strategy epmc-index-v3. Every dataset is measured with the same single section field per tier, so the counts are comparable; the per-tier value is the largest across the dataset's own accessions, excluding any accession shared with other datasets in the corpus. 27 of 29 sampled open-access articles contain the literal accession TCGA-UCS; the rest match only because Europe PMC indexes the hyphen as a word break. Counts for this dataset are scaled by 93% accordingly."},{"method":"derived","source_url":"https://www.ebi.ac.uk/europepmc/webservices/rest/search","source_label":"Europe PMC first-reference dating","retrieved_at":"2026-09-20T18:17:37.706204Z","snippet":null,"locator":"first referenced in 2017 (METHODS section)","confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Availability dated from the literature (epmc-first-reference-v2) rather than from repository file timestamps, which record re-harmonization. This is a lower bound on availability."}]},"underexplored":{"is_underexplored":false,"basis":["Reuse is within the expected range for comparable datasets (index -0.88)."],"index_value":-0.875,"percentile":28.8,"comparator_set":"132 datasets in this corpus with a citable accession and sufficient metadata","evidence":[{"method":"derived","source_url":null,"source_label":"Reuse Gap Index (rgi-huber-v2)","retrieved_at":"2026-09-21T02:11:22.976067Z","snippet":null,"locator":"Huber robust regression of log2(analyzing articles + 1) on cohort size, years available, modality breadth and access tier","confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Model, covariates and coefficients are published with the dataset export so the label can be recomputed or contested."}]},"grants":[{"core_project_num":"R01CA262516","project_num":null,"title":"Group 2 Innate Lymphoid Cell Regulation of Pancreatic Cancer Immunity","pi_names":["Vinod P Balachandran","Taha Merghoub"],"agency_ic":"NCI","activity_code":"R01","fiscal_years":[2022,2023,2024,2025],"award_amount_usd":2828375,"org_name":"SLOAN-KETTERING INST CAN RESEARCH","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=R01CA262516","role":"reuse","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:19:51.390332Z","snippet":null,"locator":"PMID 39814891 reported under R01CA262516","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Funding role inferred from whether the award appears on the dataset's own publication or on a downstream study."}]},{"core_project_num":"P50CA257881","project_num":null,"title":"Homologous recombination deficiency and beyond in pancreatic cancer: evaluating the regulators of response to pembrolizumab and olaparib (POLAR) from the immune and genomic perspectives","pi_names":["Eileen Mary O'Reilly","Alice Chia- chi Wei","MARINELA CAPANU","Vinod P Balachandran","Christine A Iacobuzio-Donahue","Jason S. Lewis","Olca Basturk"],"agency_ic":"NCI","activity_code":"P50","fiscal_years":[2022,2023,2024,2025,2026],"award_amount_usd":23823353,"org_name":"SLOAN-KETTERING INST CAN RESEARCH","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=P50CA257881","role":"infrastructure","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:19:51.390332Z","snippet":null,"locator":"PMID 39814891 reported under P50CA257881","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Funding role inferred from whether the award appears on the dataset's own publication or on a downstream study."}]},{"core_project_num":"P30CA008748","project_num":null,"title":"Antitumor Assessment","pi_names":["Elisa de Stanchina","FRANCESCA M GANY","Scott Freeswick","Serge K Lyashchenko","Neeman Mohibullah","ALEX MACDONALD","SELWYN M VICKERS","Hongbiao Carl Lekaye","Michael Jason de la Cruz","Rui Gardner","PAUL J SABBATINI","YASUHIDE FURUTA","Thomas Michael Atkinson","MITHAT GONEN","Frances Weis-Garcia","Joachim Silber","Ouathek Ouerfelli","Ralph J. Garippa","Justin Cross","NEIL SCOTT LIPMAN","Nicholas D Socci","Charles M. Rudin","Xiuyan Wang","Mara Monetti","Murray Tipping","Gouri Nanjangud","Yehuda Goldgur","Michael H. A. Roehrl","Ronald Charles Hendrickson","Isabelle Riviere","Jason S. Lewis","katia Ognianova manova","Raymond J Muller","Agnes Viale","CRAIG B THOMPSON","Marija Drobnjak","PETRUS J HENDRIKX","Carl LeKaye","WILLIE H MARK","HAKIM DJABALLAH","Isabelle Rivieri","MARGARET A LEVERSHA","AGNES VIALE","ANDREW VICKERS","NICHOLAS SOCCI","RONALD HENDRICKSON","RUI GARDNER","NANJANGUD GOURI","Colin B Begg","Andrew J Vickers","JEANNE RUPERTO","Jamie S. Ostroff","QUATHEK QUERFELLI","ARIELA NOY","NIKOLA P PAVLETICH","MARK G KLANG","JASON Arthur KOUTCHER","VICTOR E REUTER","MICHEL WJ SADELAIN","Victor Reuter","HAROLD E. VARMUS","ALEX E LASH","PAUL TEMPST","WILLIAM L GERALD","LISA K. DENZIN","NEIL LIPMAN","IRENE TSALAPATANIS","ZVI Y. FUKS","Felix Homberger","CHARLES D LUCARELLI","ELIZABETH H LACY","Lee A. Niswander","DAVID W GOLDE","Howard T. Petrie","JAMES ROTHMAN","JANKO Z. NIKOLICH","JOAN MASSAGUE","JOSEPH Rocco BERTINO","ELINOR MILLER","SCOTT E PERKINS","SIDNEY J WINAWER","PAUL A MARKS","KENNETH J MARIANS","ALAN N. HOUGHTON","RONALD D FINN","PAUL LANGNER","STEVEN S STERNBERG","DAVID D MYERS","Raymond P Warrell","KYOICHI A WATANABE","Raju S.K. Chaganti","RAYMOND NEGRYCZ","PAUL J TEMPST","ELIZABETH LACY","COLIN B BEGG"],"agency_ic":"NCI","activity_code":"P30","fiscal_years":[1985,1986,1987,1988,1989,1990,1991,1992,1993,1994,1995,1996,1997,1998,1999,2000,2001,2002,2003,2004,2005,2006,2007,2008,2009,2010,2011,2012,2013,2014,2015,2016,2017,2018,2019,2020,2021,2022,2023,2024,2025,2026],"award_amount_usd":718065586,"org_name":"SLOAN-KETTERING INST CAN RESEARCH","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=P30CA008748","role":"infrastructure","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:19:51.390332Z","snippet":null,"locator":"PMID 39814891 reported under P30CA008748","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Funding role inferred from whether the award appears on the dataset's own publication or on a downstream study."}]},{"core_project_num":"R21CA214845","project_num":null,"title":"Statistical Evaluation and Selection of Normalization Methods for microRNA Sequencing Data in Cancer Biomarker Studies","pi_names":["Li-Xuan Qin"],"agency_ic":"NCI","activity_code":"R21","fiscal_years":[2018,2019],"award_amount_usd":413524,"org_name":"SLOAN-KETTERING INST CAN RESEARCH","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=R21CA214845","role":"reuse","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:19:51.390332Z","snippet":null,"locator":"PMID 35188574 reported under R21CA214845","confidence":"high","reviewer":null,"reviewed_at":null,"note":"Funding role inferred from whether the award appears on the dataset's own publication or on a downstream study."}]},{"core_project_num":"U24CA210974","project_num":null,"title":"Visualization hub for genomics data exploration and translational discovery","pi_names":["Eric Collisson","DAVID H HAUSSLER","JINGCHUN ZHU"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2016,2017,2018,2019,2020],"award_amount_usd":4212474,"org_name":"UNIVERSITY OF CALIFORNIA SANTA CRUZ","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA210974","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA210974","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA210950","project_num":null,"title":"Integrated analysis of protein expression data from the Reverse Phase Protein Array (RPPA) platform","pi_names":["Rehan Akbani","GORDON B. MILLS","John N Weinstein"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2016,2017,2018,2019,2020],"award_amount_usd":1770270,"org_name":"UNIVERSITY OF TX MD ANDERSON CAN CTR","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA210950","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA210950","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA210949","project_num":null,"title":"Batch effects in molecular profiling data on cancers: detection, quantitation, interpretation, and correction","pi_names":["Rehan Akbani","GORDON B. MILLS","John N Weinstein"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2016,2017,2018,2019,2020],"award_amount_usd":1891786,"org_name":"UNIVERSITY OF TX MD ANDERSON CAN CTR","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA210949","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA210949","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA199461","project_num":null,"title":"Next-Generation Clustered Heat Maps for fluent, interactive exploration of omic data","pi_names":["Bradley McIntosh Broom","John N Weinstein"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2015,2016,2017,2018,2019],"award_amount_usd":2709319,"org_name":"UNIVERSITY OF TX MD ANDERSON CAN CTR","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA199461","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA199461","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA180951","project_num":null,"title":"Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Canc","pi_names":["DAVID H HAUSSLER"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2013,2014,2015,2016,2017],"award_amount_usd":2939697,"org_name":"UNIVERSITY OF CALIFORNIA SANTA CRUZ","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA180951","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA180951","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA144025","project_num":null,"title":"Harvard Genome Characterization Center","pi_names":["Raju S. Kucherlapati"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2016],"award_amount_usd":13968228,"org_name":"BRIGHAM AND WOMEN'S HOSPITAL","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA144025","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA144025","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143883","project_num":null,"title":"Integrative Pipeline for Analysis & Translational Application of TCGA Data (GDAC)","pi_names":["Rehan Akbani","GORDON B. MILLS","John N Weinstein","W K ALFRED Yung"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2016],"award_amount_usd":10635408,"org_name":"UNIVERSITY OF TX MD ANDERSON CAN CTR","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143883","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143883","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143882","project_num":null,"title":"The USC-JHU Cancer Epigenome Characterization Center","pi_names":["STEPHEN B. BAYLIN","Daniel Joseph Weisenberger","PETER W LAIRD"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2016],"award_amount_usd":13289758,"org_name":"UNIVERSITY OF SOUTHERN CALIFORNIA","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143882","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143882","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143867","project_num":null,"title":"Genome Characterization Center (GCC)","pi_names":["Stacey Gabriel","Matthew L. Meyerson"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2015,2016],"award_amount_usd":16983070,"org_name":"BROAD INSTITUTE, INC.","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143867","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143867","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143866","project_num":null,"title":"Cancer transcriptome characterization using massively parallel DNA sequencing","pi_names":["Marco Antonio Marra"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2015],"award_amount_usd":10876224,"org_name":"BRITISH COLUMBIA CANCER AGENCY","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143866","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143866","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143858","project_num":null,"title":"UCSC-Buck Inst. Genome Data Analysis Center for TCGA Research Network (GDAC)","pi_names":["Christopher Benz","DAVID H HAUSSLER"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2016],"award_amount_usd":8873081,"org_name":"UNIVERSITY OF CALIFORNIA SANTA CRUZ","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143858","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143858","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143848","project_num":null,"title":"Gene Expression Patterns in Human Tumors Identified Using Transcript Sequencing","pi_names":["David N Hayes","CHARLES M PEROU"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2016],"award_amount_usd":20842970,"org_name":"UNIV OF NORTH CAROLINA CHAPEL HILL","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143848","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143848","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143845","project_num":null,"title":"The Cancer Genome Atlas Data Analysis Center","pi_names":["LYNDA CHIN","GAD A GETZ"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2016],"award_amount_usd":15987999,"org_name":"BROAD INSTITUTE, INC.","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143845","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143845","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143843","project_num":null,"title":"The BCM Tumor Genome Characterization Center","pi_names":["RICHARD A GIBBS","David Andrew Wheeler"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013],"award_amount_usd":9488061,"org_name":"BAYLOR COLLEGE OF MEDICINE","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143843","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143843","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143840","project_num":null,"title":"MSKCC Center for Translational Cancer Genomic Analysis","pi_names":["Marc Ladanyi","CHRIS SANDER"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2016],"award_amount_usd":11508790,"org_name":"SLOAN-KETTERING INST CAN RESEARCH","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143840","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143840","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143835","project_num":null,"title":"Center for Systems Analysis of the Cancer Regulome","pi_names":["ILYA SHMULEVICH"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2016],"award_amount_usd":10612504,"org_name":"INSTITUTE FOR SYSTEMS BIOLOGY","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143835","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143835","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]},{"core_project_num":"U24CA143799","project_num":null,"title":"TCGA Data Analysis Center at Berkeley","pi_names":["PAUL T. SPELLMAN","Terence Paul Speed"],"agency_ic":"CA","activity_code":"U24","fiscal_years":[2009,2010,2011,2012,2013,2014,2016],"award_amount_usd":4897945,"org_name":"OREGON HEALTH & SCIENCE UNIVERSITY","reporter_url":"https://reporter.nih.gov/search/results?text_criteria=U24CA143799","role":"generation","evidence":[{"method":"api","source_url":"https://api.reporter.nih.gov/v2/publications/search","source_label":"NIH RePORTER","retrieved_at":"2026-09-20T17:21:14.041075Z","snippet":null,"locator":"PMID 28292439 (this dataset's marker paper) reported under U24CA143799","confidence":"high","reviewer":null,"reviewed_at":null,"note":"The award is credited on the dataset's own marker paper, so it paid to produce these data rather than to analyse them. Resolved from RePORTER's publication index; only a repository-supplied or reviewer-supplied marker paper is used, never one this pipeline nominated itself."}]}],"access_steps":[{"order":1,"action":"Open the project in the GDC Data Portal","detail":"Check the portal's current case and file counts before requesting anything; the cohort can change after this record was built.","url":"https://portal.gdc.cancer.gov/projects/TCGA-UCS","requires":[],"est_time":"5 minutes","cli_snippet":null,"audience":"human","evidence":[{"method":"derived","source_url":"https://portal.gdc.cancer.gov/projects/TCGA-UCS","source_label":"GDC access documentation","retrieved_at":"2026-09-21T12:30:59.437724Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]},{"order":2,"action":"Download the open files without an account","detail":"1,525 open-access files are marked open access. Add them to a portal cart, export a manifest, and fetch it with the GDC Data Transfer Tool.","url":"https://gdc.cancer.gov/access-data/gdc-data-transfer-tool","requires":[],"est_time":"minutes to hours, by cohort size","cli_snippet":"gdc-client download -m gdc_manifest.txt","audience":"human","evidence":[{"method":"derived","source_url":"https://gdc.cancer.gov/access-data/gdc-data-transfer-tool","source_label":"GDC access documentation","retrieved_at":"2026-09-21T12:30:59.437726Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]},{"order":3,"action":"Request controlled access through dbGaP","detail":"2,244 controlled-access files require an approved data access request. The request starts at dbGaP, not in the portal. The relevant study is phs000178.","url":"https://gdc.cancer.gov/access-data/obtaining-access-controlled-data","requires":["eRA Commons account","institutional signing official approval","dbGaP data access request for phs000178"],"est_time":"days to a few weeks after signing official approval","cli_snippet":null,"audience":"human","evidence":[{"method":"derived","source_url":"https://gdc.cancer.gov/access-data/obtaining-access-controlled-data","source_label":"GDC access documentation","retrieved_at":"2026-09-21T12:30:59.437728Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]},{"order":4,"action":"Download controlled files with your token","detail":"An approved request yields a token. The same manifest fetches nothing controlled without it.","url":"https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000178","requires":["approved dbGaP request","GDC authentication token"],"est_time":null,"cli_snippet":"gdc-client download -m gdc_manifest.txt -t gdc-user-token.txt","audience":"human","evidence":[{"method":"derived","source_url":"https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000178","source_label":"GDC access documentation","retrieved_at":"2026-09-21T12:30:59.437730Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]},{"order":5,"action":"Query the project from code, with no credentials","detail":"The file index is public even where files are not, so an agent can size the cohort before anyone requests access.","url":"https://docs.gdc.cancer.gov/API/Users_Guide/Getting_Started/","requires":[],"est_time":null,"cli_snippet":"curl -s 'https://api.gdc.cancer.gov/files' --get \\\n  --data-urlencode 'filters={\"op\":\"in\",\"content\":{\"field\":\"cases.project.project_id\",\"value\":[\"TCGA-UCS\"]}}' \\\n  --data-urlencode 'fields=file_id,file_name,data_type' \\\n  --data-urlencode 'size=10000' --data-urlencode 'format=TSV'","audience":"agent","evidence":[{"method":"derived","source_url":"https://docs.gdc.cancer.gov/API/Users_Guide/Getting_Started/","source_label":"GDC access documentation","retrieved_at":"2026-09-21T12:30:59.437732Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]},{"order":6,"action":"Pass the token when the agent needs controlled files","detail":"Without a token, an API query may return only the open subset. Compare returned counts with the record before treating them as the whole cohort.","url":"https://docs.gdc.cancer.gov/API/Users_Guide/Getting_Started/","requires":["GDC authentication token"],"est_time":null,"cli_snippet":"curl -H \"X-Auth-Token: $GDC_TOKEN\" https://api.gdc.cancer.gov/data/<file_id>","audience":"agent","evidence":[{"method":"derived","source_url":"https://docs.gdc.cancer.gov/API/Users_Guide/Getting_Started/","source_label":"GDC access documentation","retrieved_at":"2026-09-21T12:30:59.437734Z","snippet":null,"locator":null,"confidence":"medium","reviewer":null,"reviewed_at":null,"note":"Generated by applying the repository's documented access policy to this dataset's identifiers. It is not a reviewer's account of this dataset."}]}],"analysis_examples":[],"agent_package":{"json_url":"/data/datasets/gdc-tcga-ucs.json","jsonld_url":"/data/jsonld/gdc-tcga-ucs.jsonld","croissant_url":"/data/croissant/gdc-tcga-ucs.json","instructions_url":"/data/agent/gdc-tcga-ucs.md","bundle_url":null,"mcp_resource_uri":null},"related_dataset_ids":[],"related_underexplored_ids":[],"review":{"status":"machine_only","reviewer":null,"reviewer_affiliation":null,"reviewed_at":null,"sections_reviewed":[],"open_questions":[],"notes":null},"verification":{"last_verified_at":null,"link_checks":[],"n_links_ok":0,"n_links_broken":0,"upstream_version_seen":null,"upstream_version_changed":false,"upstream_counts_seen":{},"upstream_drift":{},"notes":[]},"is_showcase":false,"completeness_score":42.9,"tags":["gdc","idc","imaging","released","tcga"],"search_text":null}